Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
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[Homology]
Score
CKO_01808Hypothetical protein; KEGG: mbo:Mb2655 1.2e-30 possible methyltransferase (methylase) K00599; COG: COG0500 SAM-dependent methyltransferases. (256 aa)    
Predicted Functional Partners:
bioB
Hypothetical protein; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.593
CKO_00177
COG: COG3165 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96.
  
  
 0.568
CKO_01809
Hypothetical protein; KEGG: eci:UTI89_C1612 3.4e-12 ydaM; hypothetical protein YdaM; COG: COG2199 FOG: GGDEF domain.
       0.512
CKO_01425
Hypothetical protein; KEGG: ecp:ECP_1403 0. probable pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit.
    
 
 0.435
CKO_01810
Hypothetical protein; KEGG: lpl:lp_2048 0.00061 proS, pro; prolyl-tRNA synthetase K01881; COG: COG2606 Uncharacterized conserved protein.
       0.433
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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