STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_01829Hypothetical protein; KEGG: eci:UTI89_C2480 7.4e-33 napC; cytochrome c protein, subunit of nitrate reductase, periplasmic K02569; COG: COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit; Psort location: CytoplasmicMembrane, score:8.02. (320 aa)    
Predicted Functional Partners:
CKO_01828
Hypothetical protein; KEGG: eci:UTI89_C2076 0. bisZ; trimethylamine-N-oxide reductase 2 precursor K07812; COG: COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Psort location: Periplasmic, score:10.00.
 
 0.996
napA
Hypothetical protein; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
 
 0.973
CKO_00572
Hypothetical protein; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
 
  
 0.972
CKO_00571
Hypothetical protein; KEGG: eci:UTI89_C2482 3.3e-149 napH; ferredoxin-type protein K02574; COG: COG0348 Polyferredoxin; Psort location: CytoplasmicMembrane, score:10.00.
 
 
 0.948
CKO_05002
Hypothetical protein; KEGG: stm:STM3644 0. bisC; biotin sulfoxide reductase K08351; COG: COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Psort location: Periplasmic, score:9.44; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.829
CKO_00570
Hypothetical protein; KEGG: eci:UTI89_C2483 6.6e-112 napG; ferredoxin-type protein, subunit of nitrate reductase, periplasmic K02573; COG: COG1145 Ferredoxin.
 
  
 0.827
CKO_03812
Hypothetical protein; KEGG: pmu:PM0023 0.0014 nrfA; nitrite reductase periplasmic cytochrome c552 K03385; COG: NOG06794 non supervised orthologous group.
 
 
 0.820
nrfA
Hypothetical protein; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process; Belongs to the cytochrome c-552 family.
  
 
 0.784
CKO_04139
Hypothetical protein; KEGG: spt:SPA2823 0. barA; sensor protein; COG: COG0784 FOG: CheY-like receiver; Psort location: CytoplasmicMembrane, score:9.99.
 
 
 
 0.771
CKO_02111
Hypothetical protein; KEGG: bte:BTH_I0426 9.3e-06 cytochrome c oxidase, subunit II K02275; COG: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Psort location: OuterMembrane, score:10.00; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
 
 0.740
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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