STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_01845Hypothetical protein; COG: NOG18272 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:10.00. (532 aa)    
Predicted Functional Partners:
CKO_01844
Hypothetical protein; KEGG: stm:STM0558 1.0e-152 yfdH; putative glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
     0.811
CKO_01843
COG: COG2246 Predicted membrane protein; Psort location: CytoplasmicMembrane, score:9.46.
       0.800
CKO_01841
Hypothetical protein; KEGG: stm:STM1997 7.4e-191 umuC; error-prone repair: component of DNA polymerase V with UmuD' K03502; COG: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; Psort location: Cytoplasmic, score:8.96; Belongs to the DNA polymerase type-Y family.
       0.465
CKO_01842
Hypothetical protein; KEGG: sty:STY2206 1.2e-48 umuD; UmuD protein K03503; COG: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Belongs to the peptidase S24 family.
       0.465
CKO_00877
Hypothetical protein; COG: COG4283 Uncharacterized conserved protein.
  
     0.429
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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