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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_01988Hypothetical protein; COG: COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor). (97 aa)    
Predicted Functional Partners:
fliA
Hypothetical protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
 
 0.995
CKO_02856
Hypothetical protein; KEGG: reh:H16_B0256 3.5e-26 fliA; DNA-directed RNA polymerase sigma subunit / flagellum specific K00960; COG: COG1191 DNA-directed RNA polymerase specialized sigma subunit; Psort location: Cytoplasmic, score:8.96; Belongs to the sigma-70 factor family.
  
 0.994
CKO_01989
Hypothetical protein; COG: COG3418 Flagellar biosynthesis/type III secretory pathway chaperone.
 
  
 0.986
CKO_01987
Hypothetical protein; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
 
  
 0.964
CKO_01013
Hypothetical protein; COG: COG1516 Flagellin-specific chaperone FliS.
  
 
 0.955
CKO_02862
Hypothetical protein; COG: COG1516 Flagellin-specific chaperone FliS.
  
 
 0.955
CKO_00999
Hypothetical protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.948
CKO_01986
Hypothetical protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
  
 0.945
CKO_01984
Hypothetical protein; Required for flagellar hook formation. May act as a scaffolding protein.
 
  
 0.933
flgK
Hypothetical protein; COG: COG1256 Flagellar hook-associated protein; Psort location: OuterMembrane, score:9.49.
 
  
 0.930
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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