Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CKO_02035 | CKO_02037 | CKO_02035 | CKO_02037 | Hypothetical protein; KEGG: eci:UTI89_C1155 2.6e-117 ycdX; hypothetical protein K04477; COG: COG1387 Histidinol phosphatase and related hydrolases of the PHP family; Psort location: Cytoplasmic, score:8.96. | Hypothetical protein. | 0.414 |
CKO_02035 | ghrA | CKO_02035 | CKO_02036 | Hypothetical protein; KEGG: eci:UTI89_C1155 2.6e-117 ycdX; hypothetical protein K04477; COG: COG1387 Histidinol phosphatase and related hydrolases of the PHP family; Psort location: Cytoplasmic, score:8.96. | Hypothetical protein; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. | 0.755 |
CKO_02037 | CKO_02035 | CKO_02037 | CKO_02035 | Hypothetical protein. | Hypothetical protein; KEGG: eci:UTI89_C1155 2.6e-117 ycdX; hypothetical protein K04477; COG: COG1387 Histidinol phosphatase and related hydrolases of the PHP family; Psort location: Cytoplasmic, score:8.96. | 0.414 |
CKO_02037 | ghrA | CKO_02037 | CKO_02036 | Hypothetical protein. | Hypothetical protein; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. | 0.568 |
ghrA | CKO_02035 | CKO_02036 | CKO_02035 | Hypothetical protein; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. | Hypothetical protein; KEGG: eci:UTI89_C1155 2.6e-117 ycdX; hypothetical protein K04477; COG: COG1387 Histidinol phosphatase and related hydrolases of the PHP family; Psort location: Cytoplasmic, score:8.96. | 0.755 |
ghrA | CKO_02037 | CKO_02036 | CKO_02037 | Hypothetical protein; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. | Hypothetical protein. | 0.568 |