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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_02046COG: COG3729 General stress protein. (57 aa)    
Predicted Functional Partners:
CKO_03869
COG: COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
   
  
 0.669
CKO_05056
Hypothetical protein; COG: COG3722 Transcriptional regulator; Psort location: Cytoplasmic, score:8.96.
  
     0.639
CKO_02705
COG: COG3126 Uncharacterized protein conserved in bacteria.
  
    0.610
CKO_02339
Hypothetical protein; COG: COG0392 Predicted integral membrane protein; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.577
CKO_01651
Hypothetical protein; COG: COG3895 Predicted periplasmic protein.
  
     0.563
CKO_04704
COG: COG3036 Uncharacterized protein conserved in bacteria.
  
     0.556
CKO_00464
Hypothetical protein; KEGG: eci:UTI89_C5041 8.8e-07 yjiJ; hypothetical protein YjiJ K00403; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.555
CKO_01519
Hypothetical protein; KEGG: pfl:PFL_0043 2.4e-43 osmC; hydroperoxide resistance protein OsmC K04063; COG: COG1764 Predicted redox protein, regulator of disulfide bond formation.
   
    0.546
CKO_04417
Hypothetical protein; COG: COG1359 Uncharacterized conserved protein; Psort location: Cytoplasmic, score:8.96.
  
     0.546
ligB
Hypothetical protein; Catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. Belongs to the NAD-dependent DNA ligase family. LigB subfamily.
  
     0.521
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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