STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_02090Hypothetical protein; KEGG: sec:SC2398 0. pgtB; phosphoglycerate transport: protein for signal transmission K08475; COG: COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system; Psort location: CytoplasmicMembrane, score:10.00. (669 aa)    
Predicted Functional Partners:
CKO_02091
Hypothetical protein; COG: COG1840 ABC-type Fe3+ transport system, periplasmic component.
 
  
 0.996
CKO_02089
Hypothetical protein; KEGG: eci:UTI89_C2502 2.0e-30 atoC; acetoacetate metabolism regulatory protein AtoC K07714; COG: COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; Psort location: Cytoplasmic, score:9.26.
 
  
 0.994
CKO_02092
Hypothetical protein.
       0.773
CKO_04793
Hypothetical protein; KEGG: eci:UTI89_C1627 0. entS; EntS/YbdA MFS transporter; COG: COG5295 Autotransporter adhesin.
  
     0.747
CKO_03405
COG: COG3188 P pilus assembly protein, porin PapC; Psort location: OuterMembrane, score:10.00.
  
     0.711
CKO_03472
Hypothetical protein; KEGG: chu:CHU_1556 4.2e-11 DNA helicase K01529; COG: COG1112 Superfamily I DNA and RNA helicases and helicase subunits.
  
     0.694
CKO_02627
COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72.
  
     0.673
CKO_02093
Hypothetical protein; COG: COG2271 Sugar phosphate permease; Psort location: CytoplasmicMembrane, score:10.00.
 
   
 0.649
CKO_00635
Hypothetical protein; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.96.
  
     0.637
CKO_03404
COG: COG3121 P pilus assembly protein, chaperone PapD.
  
     0.594
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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