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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_02117COG: COG3008 Paraquat-inducible protein B. (552 aa)    
Predicted Functional Partners:
CKO_02118
Hypothetical protein; KEGG: sak:SAK_0198 0.0042 glycosyl transferase family protein K02851; COG: COG2995 Uncharacterized paraquat-inducible protein A; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.964
CKO_02116
COG: COG3009 Uncharacterized protein conserved in bacteria.
 
   
 0.957
CKO_01140
Hypothetical protein; COG: COG2995 Uncharacterized paraquat-inducible protein A; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.836
CKO_02119
Hypothetical protein; KEGG: pen:PSEEN3732 5.5e-163 ABC transporter, ATP-binding protein; COG: COG0488 ATPase components of ABC transporters with duplicated ATPase domains; Psort location: CytoplasmicMembrane, score:7.88.
       0.629
rlmL
Hypothetical protein; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
       0.606
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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