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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_02142COG: COG3108 Uncharacterized protein conserved in bacteria. (182 aa)    
Predicted Functional Partners:
CKO_02141
Hypothetical protein; KEGG: eci:UTI89_C0999 1.8e-109 ycbL; hypothetical protein K01069; COG: COG0491 Zn-dependent hydrolases, including glyoxylases.
  
    0.944
CKO_02143
COG: COG2989 Uncharacterized protein conserved in bacteria.
 
     0.863
mepA
Hypothetical protein; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. Belongs to the peptidase M74 family.
  
     0.737
CKO_01719
Hypothetical protein; KEGG: pen:PSEEN4353 5.9e-63 metallo-beta-lactamase superfamily protein K01475; COG: COG0491 Zn-dependent hydrolases, including glyoxylases.
  
    0.526
gloB
Hypothetical protein; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
  
    0.526
CKO_01391
Hypothetical protein; KEGG: eci:UTI89_C1592 1.3e-243 ycjX; hypothetical protein YcjX; COG: COG3106 Predicted ATPase; Psort location: Cytoplasmic, score:8.96.
  
     0.436
CKO_02961
COG: COG3034 Uncharacterized protein conserved in bacteria.
  
    0.411
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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