Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CKO_02232Hypothetical protein. (50 aa)    
Predicted Functional Partners:
CKO_02230
Hypothetical protein.
       0.773
CKO_02233
Hypothetical protein.
       0.773
CKO_02234
Hypothetical protein; KEGG rha:RHA1_ro04199 0.0092 DNA polymerase III subunit K00961.
       0.773
CKO_02229
Hypothetical protein; KEGG: rme:Rmet_2422 0.0046 peptidase S1C, Do K04771; COG: COG3031 Type II secretory pathway, component PulC; Psort location: CytoplasmicMembrane, score:9.82.
       0.570
CKO_02228
Hypothetical protein; COG: COG1450 Type II secretory pathway, component PulD; Psort location: OuterMembrane, score:10.00.
       0.556
CKO_02221
Hypothetical protein; COG: COG3156 Type II secretory pathway, component PulK.
       0.538
CKO_02222
Hypothetical protein; COG: COG4795 Type II secretory pathway, component PulJ.
       0.538
CKO_02223
Hypothetical protein; COG: COG2165 Type II secretory pathway, pseudopilin PulG.
       0.538
CKO_02224
Hypothetical protein; COG: COG2165 Type II secretory pathway, pseudopilin PulG.
       0.538
CKO_02225
Hypothetical protein; COG: COG2165 Type II secretory pathway, pseudopilin PulG.
       0.538
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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