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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betIHypothetical protein; Repressor involved in choline regulation of the bet genes. (203 aa)    
Predicted Functional Partners:
betA
Hypothetical protein; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
  
 0.957
betB
Hypothetical protein; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
  
 0.913
CKO_02581
Hypothetical protein; KEGG: shn:Shewana3_2719 6.6e-135 choline/carnitine/betaine transporter K01718; COG: COG1292 Choline-glycine betaine transporter; Psort location: CytoplasmicMembrane, score:10.00; Belongs to the BCCT transporter (TC 2.A.15) family.
 
  
 0.786
CKO_02440
Hypothetical protein; KEGG: eci:UTI89_C0121 7.2e-209 usp; uropathogenic specific protein K01150; COG: COG5529 Pyocin large subunit.
  
     0.539
CKO_04862
Hypothetical protein; KEGG: eci:UTI89_C0121 8.1e-59 usp; uropathogenic specific protein K01150; COG: COG3157 Hemolysin-coregulated protein (uncharacterized).
  
     0.511
CKO_02045
Hypothetical protein; KEGG: bcl:ABC2937 0.0053 NADH dehydrogenase K03885; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score:8.96.
  
     0.492
CKO_02585
Hypothetical protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity.
       0.458
CKO_03712
COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72.
  
     0.447
CKO_04027
Hypothetical protein; KEGG: stm:STM2809 8.1e-201 proV; ABC superfamily (atp_bind), glycine/betaine/proline transport protein K02000; COG: COG4175 ABC-type proline/glycine betaine transport system, ATPase component; Psort location: Cytoplasmic, score:9.12.
 
   
 0.447
CKO_03708
COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.71.
  
     0.430
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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