STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_02644Hypothetical protein; COG: COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component; Psort location: CytoplasmicMembrane, score:10.00. (804 aa)    
Predicted Functional Partners:
CKO_02646
Hypothetical protein; KEGG: eci:UTI89_C0529 3.4e-99 tesA; acyl-CoA thioesterase I precursor K01048:K01076; COG: COG2755 Lysophospholipase L1 and related esterases; Psort location: Periplasmic, score:10.00.
 
     0.908
CKO_02645
Hypothetical protein; KEGG: pen:PSEEN1885 1.4e-61 ABC transporter, ATP-binding protein; COG: COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component; Psort location: CytoplasmicMembrane, score:7.88.
 
     0.858
macB
Hypothetical protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.740
CKO_00839
COG: COG3122 Uncharacterized protein conserved in bacteria.
 
     0.707
CKO_02643
COG: COG3203 Outer membrane protein (porin); Psort location: OuterMembrane, score:9.52.
 
     0.593
CKO_02647
Hypothetical protein; KEGG: ecc:c0614 1.1e-123 ybbO; short chain dehydrogenase; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score:9.26.
       0.532
CKO_01760
Hypothetical protein; KEGG: bce:BC3740 2.6e-07 ADA regulatory protein K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.487
CKO_04981
Hypothetical protein; KEGG: vfi:VFA0886 8.9e-26 zinc metalloprotease; COG: NOG14695 non supervised orthologous group.
  
     0.425
lolD
Hypothetical protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
  
 0.420
CKO_02052
Hypothetical protein; KEGG: rru:Rru_A2804 1.8e-68 ABC transporter component K06020; COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score:7.88.
  
  
 0.420
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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