Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CKO_02786Hypothetical protein; KEGG: eci:UTI89_C0404 5.7e-168 yaiC; hypothetical protein; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:10.00. (365 aa)    
Predicted Functional Partners:
CKO_03829
Hypothetical protein; KEGG: eci:UTI89_C1702 1.3e-31 hypothetical protein; COG: COG4943 Predicted signal transduction protein containing sensor and EAL domains.
   
 0.925
CKO_02697
Hypothetical protein; KEGG: vfi:VF0494 1.2e-31 sensory transduction protein kinase; COG: COG4943 Predicted signal transduction protein containing sensor and EAL domains; Psort location: CytoplasmicMembrane, score:9.82.
   
 0.914
CKO_00602
Hypothetical protein; KEGG: vfi:VF0494 5.9e-30 sensory transduction protein kinase; COG: COG2200 FOG: EAL domain; Psort location: CytoplasmicMembrane, score:9.82.
 
  
 0.905
CKO_01164
Hypothetical protein; KEGG: eci:UTI89_C1702 5.1e-33 hypothetical protein; COG: COG2200 FOG: EAL domain; Psort location: CytoplasmicMembrane, score:9.27.
 
  
 0.886
CKO_04971
Hypothetical protein; KEGG: mca:MCA1246 1.9e-48 methyltransferase CheR, putative K03412:K00575; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:9.82.
  
 
 0.862
CKO_04967
Hypothetical protein; KEGG: shn:Shewana3_3829 0.00021 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; COG: COG2200 FOG: EAL domain; Psort location: Cytoplasmic, score:8.96.
  
  
 0.847
CKO_02908
Hypothetical protein; KEGG: eci:UTI89_C1702 7.0e-26 hypothetical protein; COG: COG2200 FOG: EAL domain; Psort location: CytoplasmicMembrane, score:9.82.
 
  
 0.834
CKO_00401
Hypothetical protein; KEGG: vfi:VF0087 2.6e-23 sensory transduction protein kinase; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:10.00.
  
  
 0.794
CKO_00428
Hypothetical protein; KEGG: vfi:VF0494 7.5e-10 sensory transduction protein kinase; COG: COG2200 FOG: EAL domain.
  
  
 0.779
CKO_00285
Hypothetical protein; KEGG: shn:Shewana3_3829 2.4e-26 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.733
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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