STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_02792Hypothetical protein; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:10.00. (414 aa)    
Predicted Functional Partners:
CKO_02791
Hypothetical protein; KEGG: efa:EF1922 4.4e-07 transcriptional regulator, LacI family/carbohydrate kinase, PfkB family protein K00852; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score:9.26.
  
    0.750
CKO_04160
Hypothetical protein; COG: COG0738 Fucose permease; Psort location: CytoplasmicMembrane, score:10.00.
  
  
 0.630
CKO_02793
Hypothetical protein; KEGG: ypa:YPA_2031 3.3e-94 gluconate 5-dehydrogenase K00046; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score:9.97.
  
    0.613
CKO_05006
Hypothetical protein; COG: NOG13334 non supervised orthologous group.
 
    0.602
CKO_02794
Hypothetical protein; Psort location: Cytoplasmic, score:8.96.
       0.578
CKO_02795
Hypothetical protein; KEGG: bps:BPSS1635 0.00051 probable class III aminotransferase K00836; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:10.00.
       0.555
CKO_00650
Hypothetical protein; KEGG: cal:orf19.4384 8.9e-09 HXT10; fructose symporter K01804; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.540
nanA
Hypothetical protein; Catalyzes the reversible aldol cleavage of N-acetylneuraminic acid (sialic acid; Neu5Ac) to form pyruvate and N-acetylmannosamine (ManNAc) via a Schiff base intermediate.
  
  
 0.539
CKO_05139
Hypothetical protein; KEGG: rpc:RPC_4382 3.3e-78 dihydrodipicolinate synthetase K01714; COG: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Psort location: Cytoplasmic, score:8.96.
  
  
 0.539
CKO_05005
Hypothetical protein; KEGG: efa:EF1922 0.00037 transcriptional regulator, LacI family/carbohydrate kinase, PfkB family protein K00852; COG: COG1609 Transcriptional regulators; Psort location: Cytoplasmic, score:9.97.
 
    0.446
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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