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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_02817Hypothetical protein; KEGG: ece:Z0462 4.2e-236 putative sensor kinase; hexosephosphate transport K07675; COG: COG3851 Signal transduction histidine kinase, glucose-6-phosphate specific; Psort location: CytoplasmicMembrane, score:10.00. (513 aa)    
Predicted Functional Partners:
CKO_02815
Hypothetical protein; KEGG: bur:Bcep18194_B2520 4.3e-28 two component transcriptional regulator, LuxR family; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Psort location: Cytoplasmic, score:9.97.
 
 0.996
CKO_01389
Hypothetical protein; COG: COG1983 Putative stress-responsive transcriptional regulator.
  
  
 0.870
CKO_00008
Hypothetical protein; KEGG: ava:Ava_C0116 2.7e-28 two component transcriptional regulator, LuxR family; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Psort location: Cytoplasmic, score:9.97.
 
 
 0.858
CKO_04367
Hypothetical protein; KEGG: pha:PSHAa1916 8.9e-21 uvrY, sirA; response regulator K07689; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Psort location: Cytoplasmic, score:9.26.
 
 
 0.845
CKO_00584
Hypothetical protein; KEGG: eci:UTI89_C1417 4.5e-42 narL; NarL transcriptional dual regulator K07684; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Psort location: Cytoplasmic, score:9.97.
 
 
 0.842
CKO_01296
Hypothetical protein; KEGG: eci:UTI89_C1417 3.1e-105 narL; NarL transcriptional dual regulator K07684; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Psort location: Cytoplasmic, score:9.97.
 
 
 0.836
CKO_02622
Hypothetical protein; KEGG: fal:FRAAL1304 2.8e-24 putative protein-glutamate methylesterase; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Psort location: Cytoplasmic, score:9.97.
 
 
 0.828
rcsB
Hypothetical protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions.
 
 
 0.821
CKO_01387
Hypothetical protein; KEGG: cal:orf19.3100 2.9e-05 USO4; coiled-coil protein necessary for protein transport from ER to Golgi K01553; COG: COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription; Psort location: Cytoplasmic, score:8.96.
  
  
 0.800
CKO_01031
Hypothetical protein; KEGG: pha:PSHAa1916 3.2e-71 uvrY, sirA; response regulator K07689; COG: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Psort location: Cytoplasmic, score:9.97.
 
 
 0.793
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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