STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_02856Hypothetical protein; KEGG: reh:H16_B0256 3.5e-26 fliA; DNA-directed RNA polymerase sigma subunit / flagellum specific K00960; COG: COG1191 DNA-directed RNA polymerase specialized sigma subunit; Psort location: Cytoplasmic, score:8.96; Belongs to the sigma-70 factor family. (231 aa)    
Predicted Functional Partners:
CKO_01988
Hypothetical protein; COG: COG2747 Negative regulator of flagellin synthesis (anti-sigma28 factor).
  
 0.994
CKO_02854
COG: COG1360 Flagellar motor protein; Psort location: CytoplasmicMembrane, score:8.02.
 
  
 0.972
CKO_02863
Hypothetical protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
  
 0.969
CKO_02881
Hypothetical protein; COG: COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
 
 
 0.969
CKO_02855
Hypothetical protein; COG: COG1291 Flagellar motor component; Psort location: CytoplasmicMembrane, score:10.00.
  
  
 0.965
flgK-2
Hypothetical protein; KEGG: xft:PD1678 0.0056 phoQ; two-component system, sensor protein K07637; COG: COG1256 Flagellar hook-associated protein; Psort location: OuterMembrane, score:9.49.
 
  
 0.964
CKO_01985
Hypothetical protein; COG: COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
 
 
 0.961
CKO_02858
Hypothetical protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
  
 0.961
CKO_02862
Hypothetical protein; COG: COG1516 Flagellin-specific chaperone FliS.
 
  
 0.956
CKO_02878
Hypothetical protein; COG: COG4787 Flagellar basal body rod protein.
 
  
 0.949
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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