Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CKO_03073Hypothetical protein; COG: COG5499 Predicted transcription regulator containing HTH domain. (139 aa)    
Predicted Functional Partners:
CKO_03074
COG: COG4680 Uncharacterized protein conserved in bacteria.
 
 
 0.997
CKO_02030
Hypothetical protein; COG: NOG09844 non supervised orthologous group.
  
     0.535
CKO_02031
Hypothetical protein; COG: NOG08684 non supervised orthologous group.
  
     0.529
CKO_03075
Hypothetical protein; KEGG: ecj:JW3896 1.5e-167 glpX; fructose 1,6-bisphosphatase II K02446; COG: COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins; Psort location: Cytoplasmic, score:8.96.
       0.528
CKO_02069
Hypothetical protein; COG: COG3093 Plasmid maintenance system antidote protein.
 
   
 0.496
CKO_00245
Hypothetical protein; KEGG: spz:M5005_Spy_1664 0.0062 PTS system, mannitol (cryptic)-specific IIA component K00890; COG: COG3711 Transcriptional antiterminator; Psort location: Cytoplasmic, score:8.96.
  
     0.451
CKO_02102
COG: COG3110 Uncharacterized protein conserved in bacteria; Belongs to the UPF0319 family.
  
     0.448
CKO_03798
Hypothetical protein; KEGG: stm:STM3885 2.2e-12 rbsK; ribokinase K00852; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score:9.97.
  
     0.429
CKO_03889
Hypothetical protein; COG: NOG06780 non supervised orthologous group.
  
     0.415
CKO_04946
Hypothetical protein; COG: COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system.
  
   
 0.403
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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