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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_03074COG: COG4680 Uncharacterized protein conserved in bacteria. (102 aa)    
Predicted Functional Partners:
CKO_03073
Hypothetical protein; COG: COG5499 Predicted transcription regulator containing HTH domain.
 
 
 0.996
CKO_02623
COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72.
  
     0.657
CKO_02628
COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:10.00.
  
     0.575
CKO_03075
Hypothetical protein; KEGG: ecj:JW3896 1.5e-167 glpX; fructose 1,6-bisphosphatase II K02446; COG: COG1494 Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins; Psort location: Cytoplasmic, score:8.96.
       0.528
CKO_02625
COG: COG3188 P pilus assembly protein, porin PapC; Psort location: OuterMembrane, score:10.00.
  
     0.496
CKO_02026
Hypothetical protein; COG: NOG09843 non supervised orthologous group.
  
     0.493
CKO_00635
Hypothetical protein; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.96.
  
     0.488
CKO_05035
Hypothetical protein; COG: NOG11374 non supervised orthologous group.
  
     0.485
CKO_02627
COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72.
  
     0.417
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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