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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_03124Hypothetical protein; KEGG: eci:UTI89_C4472 9.4e-168 yiiD; putative acetyltransferase K00633; COG: COG0454 Histone acetyltransferase HPA2 and related acetyltransferases. (329 aa)    
Predicted Functional Partners:
dtd
Hypothetical protein; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.
  
    0.806
CKO_03126
Hypothetical protein; KEGG: stt:t3594 7.0e-147 rbn; ribonuclease BN; COG: COG1295 Predicted membrane protein; Psort location: CytoplasmicMembrane, score:10.00.
       0.800
CKO_03127
Hypothetical protein; KEGG: lil:LA1476 2.6e-09 putative haloacid dehalogenase-like hydrolase K01560; COG: COG1011 Predicted hydrolase (HAD superfamily); Psort location: Cytoplasmic, score:8.96.
       0.800
CKO_00587
COG: COG3082 Uncharacterized protein conserved in bacteria; Belongs to the UPF0352 family.
  
     0.735
seqA
Hypothetical protein; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
  
     0.695
bamC
Hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.691
CKO_00460
Hypothetical protein; COG: NOG13546 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.691
CKO_04502
Hypothetical protein; COG: NOG11454 non supervised orthologous group.
  
     0.676
fadR
Hypothetical protein; Multifunctional regulator of fatty acid metabolism.
  
     0.659
CKO_04757
Hypothetical protein; COG: COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain; Psort location: Cytoplasmic, score:8.96.
  
     0.613
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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