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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_03336Hypothetical protein; COG: NOG17119 non supervised orthologous group. (77 aa)    
Predicted Functional Partners:
CKO_03869
COG: COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
   
    0.816
CKO_03415
Hypothetical protein; COG: NOG16919 non supervised orthologous group.
   
    0.815
CKO_01764
Hypothetical protein; COG: NOG09763 non supervised orthologous group.
  
    0.782
CKO_01127
Hypothetical protein; COG: NOG09766 non supervised orthologous group.
  
     0.748
CKO_04502
Hypothetical protein; COG: NOG11454 non supervised orthologous group.
  
     0.733
tus
Hypothetical protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.
  
     0.698
CKO_02304
COG: COG3637 Opacity protein and related surface antigens; Psort location: OuterMembrane, score:10.00.
  
     0.697
CKO_01577
Hypothetical protein; COG: NOG11441 non supervised orthologous group; Belongs to the UPF0482 family.
  
     0.680
CKO_01124
Hypothetical protein; KEGG: spt:SPA0993 1.7e-33 holE; DNA polymerase III, theta subunit K02345; COG: NOG13893 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.643
CKO_00079
Hypothetical protein; KEGG: psp:PSPPH_5214 2.0e-07 atpI; ATP synthase F0, I subunit K02116; COG: COG3312 F0F1-type ATP synthase, subunit I; Psort location: CytoplasmicMembrane, score:9.46.
  
     0.599
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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