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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_03340Hypothetical protein; KEGG: fnu:FN1424 3.4e-26 acyl-CoA dehydrogenase, short-chain specific K00248; COG: COG2025 Electron transfer flavoprotein, alpha subunit. (293 aa)    
Predicted Functional Partners:
fixA
Hypothetical protein; Required for anaerobic carnitine reduction. May bring reductant to CaiA.
 
 0.997
caiA
Hypothetical protein; Catalyzes the reduction of crotonobetainyl-CoA to gamma- butyrobetainyl-CoA; Belongs to the acyl-CoA dehydrogenase family.
 
 0.995
CKO_00864
Hypothetical protein; KEGG: ecp:ECP_1975 1.9e-199 putative acyl-CoA dehydrogenase K00257; COG: COG1960 Acyl-CoA dehydrogenases; Psort location: Cytoplasmic, score:8.96.
 
 0.994
CKO_03338
Hypothetical protein; Could be a 3Fe-4S cluster-containing protein.
 
 0.989
CKO_04126
Hypothetical protein; COG: COG2086 Electron transfer flavoprotein, beta subunit; Psort location: Cytoplasmic, score:8.96.
 
 0.977
CKO_04122
Hypothetical protein; Could be a 3Fe-4S cluster-containing protein.
 
 0.973
CKO_03339
Hypothetical protein; Part of an electron transfer system. Belongs to the ETF-QO/FixC family.
 
 
 0.960
CKO_04487
Hypothetical protein; KEGG: stm:STM3219 0. fadH; 2,4-dieonyl-CoA reductase K00219; COG: COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Psort location: Cytoplasmic, score:8.96.
 
 
 0.926
CKO_04121
Hypothetical protein; Part of an electron transfer system. Belongs to the ETF-QO/FixC family.
 
 
 0.903
CKO_03651
Hypothetical protein; KEGG: eci:UTI89_C4787 1.5e-265 aidB; putative acyl-CoA dehydrogenase; COG: COG1960 Acyl-CoA dehydrogenases.
 
 
 0.882
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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