STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_03445Hypothetical protein; KEGG: reh:H16_A0195 3.9e-59 putative GTPase (G3E family); COG: COG0523 Putative GTPases (G3E family); Psort location: Cytoplasmic, score:8.96. (322 aa)    
Predicted Functional Partners:
CKO_03444
Hypothetical protein; COG: COG2879 Uncharacterized small protein.
  
  
 0.973
CKO_03443
COG: COG1966 Carbon starvation protein, predicted membrane protein; Psort location: CytoplasmicMembrane, score:10.00.
  
    0.798
rpsN
Hypothetical protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.755
CKO_02562
Hypothetical protein; COG: COG2879 Uncharacterized small protein; Psort location: Cytoplasmic, score:8.96.
  
  
 0.676
folE2
Hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.622
map
Hypothetical protein; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
   0.578
rpmG
COG: COG0267 Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
  
 0.576
CKO_00932
COG: COG1734 DnaK suppressor protein; Psort location: Cytoplasmic, score:8.96.
  
  
 0.482
dksA
Hypothetical protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression.
  
  
 0.482
CKO_01827
Hypothetical protein; COG: COG3443 Predicted periplasmic or secreted protein; Psort location: Cytoplasmic, score:8.96.
  
  
 0.446
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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