close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_03472Hypothetical protein; KEGG: chu:CHU_1556 4.2e-11 DNA helicase K01529; COG: COG1112 Superfamily I DNA and RNA helicases and helicase subunits. (1171 aa)    
Predicted Functional Partners:
CKO_03984
Hypothetical protein; COG: COG3718 Uncharacterized enzyme involved in inositol metabolism; Psort location: Cytoplasmic, score:8.96.
   
    0.830
CKO_03997
Hypothetical protein; KEGG: hpj:jhp1098 0.00052 polar amino acid transport system ATP-binding protein K02028; COG: COG1106 Predicted ATPases.
  
    0.826
CKO_04793
Hypothetical protein; KEGG: eci:UTI89_C1627 0. entS; EntS/YbdA MFS transporter; COG: COG5295 Autotransporter adhesin.
 
     0.783
CKO_00635
Hypothetical protein; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.96.
  
     0.753
CKO_04300
Hypothetical protein; COG: COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters; Psort location: CytoplasmicMembrane, score:10.00.
  
    0.750
CKO_02627
COG: COG3539 P pilus assembly protein, pilin FimA; Psort location: Extracellular, score:9.72.
  
     0.749
CKO_02090
Hypothetical protein; KEGG: sec:SC2398 0. pgtB; phosphoglycerate transport: protein for signal transmission K08475; COG: COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.694
CKO_05035
Hypothetical protein; COG: NOG11374 non supervised orthologous group.
  
  
 0.681
CKO_05134
Hypothetical protein; KEGG: reh:H16_A2683 2.9e-21 response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains K01529; COG: COG3933 Transcriptional antiterminator; Psort location: Cytoplasmic, score:8.96.
 
    0.647
CKO_03405
COG: COG3188 P pilus assembly protein, porin PapC; Psort location: OuterMembrane, score:10.00.
  
    0.620
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.