Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CKO_03499Hypothetical protein; KEGG: vfi:VFB02 1.7e-24 traC; DNA primase TraC; COG: COG4227 Antirestriction protein. (198 aa)    
Predicted Functional Partners:
CKO_03500
Hypothetical protein; KEGG: vfi:VFB02 2.8e-24 traC; DNA primase TraC; COG: COG4227 Antirestriction protein.
     0.994
xseB
Hypothetical protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 
 0.952
CKO_03501
Hypothetical protein; COG: NOG08745 non supervised orthologous group.
 
    0.858
CKO_00896
Hypothetical protein; COG: COG3451 Type IV secretory pathway, VirB4 components.
  
     0.692
CKO_00889
Hypothetical protein; COG: COG2948 Type IV secretory pathway, VirB10 components.
 
     0.688
CKO_03502
Hypothetical protein; COG: NOG08745 non supervised orthologous group.
 
    0.657
CKO_00890
Hypothetical protein; COG: COG3504 Type IV secretory pathway, VirB9 components.
 
     0.653
CKO_00891
Hypothetical protein; COG: COG3736 Type IV secretory pathway, component VirB8.
 
     0.592
CKO_00902
Hypothetical protein; COG: NOG11459 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.573
folD
Hypothetical protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
    0.569
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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