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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_03561Hypothetical protein; COG: NOG18556 non supervised orthologous group. (49 aa)    
Predicted Functional Partners:
pyrB
Hypothetical protein; KEGG: sec:SC4315 1.4e-157 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609; COG: COG0540 Aspartate carbamoyltransferase, catalytic chain; Psort location: Cytoplasmic, score:9.97; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
       0.780
pyrI
Hypothetical protein; Involved in allosteric regulation of aspartate carbamoyltransferase.
     
 0.762
argR
Hypothetical protein; Regulates arginine biosynthesis genes.
       0.612
CKO_03564
Hypothetical protein; KEGG: ape:APE_1501.1 2.9e-22 ribonuclease UK114; COG: COG0251 Putative translation initiation inhibitor, yjgF family.
       0.563
CKO_03559
Hypothetical protein.
       0.417
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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