Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CKO_03567Hypothetical protein; KEGG: stt:t4491 0. mgtA; Mg(2+) transport ATPase, P-type K01531; COG: COG0474 Cation transport ATPase; Psort location: CytoplasmicMembrane, score:10.00. (854 aa)    
Predicted Functional Partners:
CKO_02664
Hypothetical protein; KEGG: oih:OB0089 2.7e-28 cation-transporting ATPase K07507; COG: COG1285 Uncharacterized membrane protein; Psort location: CytoplasmicMembrane, score:9.46.
 
 
 0.656
rpsH
Hypothetical protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
    
   0.589
rpsM
Hypothetical protein; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
   
   0.582
CKO_00897
Hypothetical protein; COG: NOG22876 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.50.
   
    0.577
rpsE
Hypothetical protein; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
   0.576
rplD
Hypothetical protein; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
    
   0.560
CKO_03568
Hypothetical protein.
       0.546
mntH
Hypothetical protein; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
 
 
 0.497
CKO_00890
Hypothetical protein; COG: COG3504 Type IV secretory pathway, VirB9 components.
   
    0.469
CKO_00497
Hypothetical protein; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
    0.464
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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