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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_03593Hypothetical protein; KEGG: eco:b4236 1.5e-41 cybC; cytochrome b562, truncated (pseudogene); COG: COG3783 Soluble cytochrome b562; Psort location: Periplasmic, score:9.76. (128 aa)    
Predicted Functional Partners:
crl
Hypothetical protein; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.758
CKO_04096
Hypothetical protein; COG: NOG14130 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
  
     0.717
CKO_02805
Hypothetical protein; KEGG: eci:UTI89_C0334 7.5e-56 hypothetical protein; COG: COG3468 Type V secretory pathway, adhesin AidA.
  
     0.702
CKO_03594
Hypothetical protein; KEGG: reh:H16_A2705 9.0e-99 pmbA; microcin-processing peptidase 1; COG: COG0312 Predicted Zn-dependent proteases and their inactivated homologs; Psort location: Cytoplasmic, score:9.97.
       0.677
CKO_03684
Hypothetical protein; COG: COG2771 DNA-binding HTH domain-containing proteins.
  
     0.674
CKO_01332
Hypothetical protein; COG: NOG06197 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.670
CKO_02727
COG: COG3056 Uncharacterized lipoprotein.
  
     0.669
CKO_03591
Hypothetical protein; COG: NOG18554 non supervised orthologous group.
 
     0.666
CKO_03589
Hypothetical protein; COG: NOG18555 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
 
     0.647
CKO_03861
Hypothetical protein; KEGG: mfa:Mfla_1448 0.0052 cytochrome-c oxidase K00403; COG: NOG09019 non supervised orthologous group.
  
     0.644
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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