close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_03594Hypothetical protein; KEGG: reh:H16_A2705 9.0e-99 pmbA; microcin-processing peptidase 1; COG: COG0312 Predicted Zn-dependent proteases and their inactivated homologs; Psort location: Cytoplasmic, score:9.97. (450 aa)    
Predicted Functional Partners:
CKO_04652
Hypothetical protein; KEGG: eci:UTI89_C3675 6.9e-243 tldD; CsrA activity inhibitor TldD K03568; COG: COG0312 Predicted Zn-dependent proteases and their inactivated homologs; Psort location: Cytoplasmic, score:9.26.
 
 
0.879
CKO_03593
Hypothetical protein; KEGG: eco:b4236 1.5e-41 cybC; cytochrome b562, truncated (pseudogene); COG: COG3783 Soluble cytochrome b562; Psort location: Periplasmic, score:9.76.
       0.677
CKO_03595
COG: COG3028 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96; Belongs to the UPF0307 family.
  
    0.608
CKO_03591
Hypothetical protein; COG: NOG18554 non supervised orthologous group.
       0.430
CKO_03592
Hypothetical protein.
       0.430
CKO_03589
Hypothetical protein; COG: NOG18555 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96.
       0.424
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.