Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CKO_03608Hypothetical protein; COG: COG2105 Uncharacterized conserved protein. (114 aa)    
Predicted Functional Partners:
CKO_03610
COG: COG0729 Outer membrane protein; Psort location: OuterMembrane, score:9.93.
 
   
 0.878
CKO_03609
Hypothetical protein; KEGG: bmf:BAB1_0046 2.7e-14 family of unknown function DUF490 K01076; COG: COG2911 Uncharacterized protein conserved in bacteria; Psort location: OuterMembrane, score:9.52.
 
   
 0.869
CKO_02406
COG: COG3790 Predicted membrane protein; Psort location: CytoplasmicMembrane, score:9.46.
  
     0.644
CKO_01030
Hypothetical protein; COG: NOG13894 non supervised orthologous group.
  
     0.638
CKO_03401
Hypothetical protein; KEGG: ece:Z5988 8.8e-101 putative lipoate-protein ligase A K03800:K07186; COG: COG3726 Uncharacterized membrane protein affecting hemolysin expression.
  
     0.594
CKO_00177
COG: COG3165 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96.
  
     0.588
CKO_00308
Hypothetical protein; KEGG: eci:UTI89_C2806 3.8e-68 gcvR; glycine cleavage system transcriptional repressor K03567; COG: COG2716 Glycine cleavage system regulatory protein; Psort location: Cytoplasmic, score:9.97.
  
     0.576
uspB
Hypothetical protein; COG: NOG09779 non supervised orthologous group.
  
     0.549
CKO_01613
Hypothetical protein; COG: NOG06063 non supervised orthologous group.
  
     0.544
CKO_00597
Hypothetical protein; COG: NOG14216 non supervised orthologous group.
  
     0.526
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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