STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ulaFHypothetical protein; Catalyzes the isomerization of L-ribulose 5-phosphate to D- xylulose 5-phosphate. Is involved in the anaerobic L-ascorbate utilization. (228 aa)    
Predicted Functional Partners:
CKO_03638
Hypothetical protein; KEGG: ecs:ECs5173 1.1e-143 putative hexulose-6-phosphate isomerase K03079; COG: COG3623 Putative L-xylulose-5-phosphate 3-epimerase; Psort location: Cytoplasmic, score:8.96.
  
 0.988
araB
Hypothetical protein; KEGG: spt:SPA0105 6.4e-288 araB; L-ribulokinase K00853; COG: COG1069 Ribulose kinase.
 
 
 0.977
araA
Hypothetical protein; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.973
CKO_05040
Hypothetical protein; KEGG: ecp:ECP_3687 5.0e-146 putative hexulose-6-phosphate isomerase K03082; COG: COG3623 Putative L-xylulose-5-phosphate 3-epimerase.
  
 0.950
xylB
Hypothetical protein; KEGG: bxe:Bxe_A0729 4.1e-158 xylulokinase K00854; COG: COG1070 Sugar (pentulose and hexulose) kinases.
  
 
 0.918
xylB-2
Hypothetical protein; KEGG: spt:SPA3511 2.6e-236 xylB; xylulose kinase K00854; COG: COG1070 Sugar (pentulose and hexulose) kinases.
  
 
 0.918
CKO_04807
Hypothetical protein; KEGG: eci:UTI89_C3884 2.7e-113 rpe; D-ribulose-5-phosphate 3-epimerase K01783; COG: COG0036 Pentose-5-phosphate-3-epimerase; Psort location: Cytoplasmic, score:8.96; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.905
araD
Hypothetical protein; Involved in the degradation of L-arabinose. Catalyzes the interconversion of L-ribulose 5-phosphate (LRu5P) and D-xylulose 5- phosphate (D-Xu5P) via a retroaldol/aldol mechanism (carbon-carbon bond cleavage analogous to a class II aldolase reaction).
  
  
 
0.902
CKO_05041
Hypothetical protein; KEGG: sty:STY4119 2.5e-119 yiaS, sgbE; putative sugar isomerase K03080; COG: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
  
  
 
0.902
uxaC
KEGG: sha:SH2648 7.1e-131 hypothetical protein K01812; COG: COG1904 Glucuronate isomerase; Psort location: Cytoplasmic, score:8.96.
     
 0.809
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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