STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_03980Hypothetical protein; KEGG: msm:MSMEG_4171 1.1e-45 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00. (331 aa)    
Predicted Functional Partners:
CKO_03979
Hypothetical protein; KEGG: bpm:BURPS1710b_A0023 3.1e-10 ABC transporter, ATP-binding protein domain protein K02056; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
 0.994
CKO_03990
Hypothetical protein; KEGG: msm:MSMEG_3095 3.5e-19 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component; Psort location: Periplasmic, score:9.76.
 0.985
CKO_03981
Hypothetical protein; KEGG: eca:ECA2719 2.2e-184 ABC transporter, ATP-binding protein K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score:9.93.
   
 0.951
CKO_03988
Hypothetical protein; KEGG: msm:MSMEG_4171 1.6e-60 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score:10.00.
  
  
 
0.921
CKO_03785
Hypothetical protein; KEGG: msm:MSMEG_3095 2.5e-23 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component; Psort location: Periplasmic, score:9.76.
 
 0.865
rbsA
Hypothetical protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.860
CKO_03989
Hypothetical protein; KEGG: yps:YPTB1075 3.8e-242 ABC type sugar transporter with fused ATP-binding domains K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score:8.02.
 
 0.858
CKO_00091
Hypothetical protein; KEGG: msm:MSMEG_3095 2.5e-41 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component; Psort location: Periplasmic, score:10.00.
 
 0.857
araG
Hypothetical protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
 
 0.854
CKO_03786
Hypothetical protein; KEGG: ecc:c5093 5.8e-255 yjcW; D-allose transport ATP-binding protein alsA K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score:9.82.
 
 0.849
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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