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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04003COG: COG3333 Uncharacterized protein conserved in bacteria; Psort location: CytoplasmicMembrane, score:10.00. (504 aa)    
Predicted Functional Partners:
CKO_04002
Hypothetical protein; COG: NOG11450 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.46.
 
  
 0.993
CKO_04001
COG: COG3181 Uncharacterized protein conserved in bacteria; Psort location: Periplasmic, score:10.00.
 
  
 0.992
CKO_03999
Hypothetical protein; KEGG: stt:t2678 1.2e-215 tctE; putative two-component system sensor kinase K07649; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score:10.00.
 
   
 0.784
CKO_04000
Hypothetical protein; KEGG: rha:RHA1_ro05622 3.8e-36 response regulator (protein-glutamate methylesterase) K07669; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
     0.616
CKO_03566
Hypothetical protein; COG: COG3090 TRAP-type C4-dicarboxylate transport system, small permease component; Psort location: CytoplasmicMembrane, score:9.46.
  
     0.512
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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