close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04028Hypothetical protein; KEGG: bpm:BURPS1710b_A0449 1.8e-63 glycine betaine/L-proline ABC transporter, permease protein K02001; COG: COG4176 ABC-type proline/glycine betaine transport system, permease component; Psort location: CytoplasmicMembrane, score:10.00. (354 aa)    
Predicted Functional Partners:
CKO_04027
Hypothetical protein; KEGG: stm:STM2809 8.1e-201 proV; ABC superfamily (atp_bind), glycine/betaine/proline transport protein K02000; COG: COG4175 ABC-type proline/glycine betaine transport system, ATPase component; Psort location: Cytoplasmic, score:9.12.
 0.999
CKO_04029
Hypothetical protein; COG: COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components; Psort location: Periplasmic, score:10.00.
 
 0.997
CKO_02925
Hypothetical protein; KEGG: lwe:lwe1439 7.0e-44 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; COG: COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
 
  
 0.834
purN
Hypothetical protein; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
  
 0.541
CKO_04026
Hypothetical protein.
       0.515
CKO_02927
Hypothetical protein; KEGG: lwe:lwe1439 1.2e-32 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein; COG: COG1174 ABC-type proline/glycine betaine transport systems, permease component; Psort location: CytoplasmicMembrane, score:10.00.
 
  
0.477
CKO_01587
Hypothetical protein; KEGG: lwe:lwe1443 2.0e-32 opuCC; glycine betaine/L-proline ABC transporter, glycine betaine/L-proline-binding protein; COG: COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
 
  
 0.441
purM
Hypothetical protein; KEGG: sbo:SBO_2520 8.2e-137 purM; phosphoribosylaminoimidazole synthetase K01933; COG: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; Psort location: Cytoplasmic, score:8.96.
   
    0.408
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.