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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04029Hypothetical protein; COG: COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components; Psort location: Periplasmic, score:10.00. (331 aa)    
Predicted Functional Partners:
CKO_04027
Hypothetical protein; KEGG: stm:STM2809 8.1e-201 proV; ABC superfamily (atp_bind), glycine/betaine/proline transport protein K02000; COG: COG4175 ABC-type proline/glycine betaine transport system, ATPase component; Psort location: Cytoplasmic, score:9.12.
 
 0.999
CKO_04028
Hypothetical protein; KEGG: bpm:BURPS1710b_A0449 1.8e-63 glycine betaine/L-proline ABC transporter, permease protein K02001; COG: COG4176 ABC-type proline/glycine betaine transport system, permease component; Psort location: CytoplasmicMembrane, score:10.00.
 
 0.997
CKO_05056
Hypothetical protein; COG: COG3722 Transcriptional regulator; Psort location: Cytoplasmic, score:8.96.
  
     0.574
purN
Hypothetical protein; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
    0.528
CKO_04597
Hypothetical protein; COG: COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; Psort location: CytoplasmicMembrane, score:10.00.
     
 0.508
potA
Hypothetical protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
    
 0.485
potA-2
Hypothetical protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
    
 0.485
CKO_04682
Hypothetical protein; KEGG: eca:ECA0855 1.4e-19 ABC transporter permease protein K02028; COG: COG4597 ABC-type amino acid transport system, permease component; Psort location: CytoplasmicMembrane, score:10.00.
  
  
  0.484
CKO_04897
COG: COG3714 Predicted membrane protein; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.469
CKO_03883
Hypothetical protein; COG: COG1175 ABC-type sugar transport systems, permease components; Psort location: CytoplasmicMembrane, score:9.86.
  
  
 0.468
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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