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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04102Hypothetical protein; KEGG: eci:UTI89_C3250 1.3e-44 ygeR; hypothetical lipoprotein YgeR precursor; COG: COG0739 Membrane proteins related to metalloendopeptidases. (317 aa)    
Predicted Functional Partners:
rpoS
Hypothetical protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
  
  
 0.835
CKO_00214
Hypothetical protein; KEGG: ecp:ECP_2570 5.0e-169 signal peptidase I K03100; COG: COG0681 Signal peptidase I; Psort location: CytoplasmicMembrane, score:10.00; Belongs to the peptidase S26 family.
 
  
 0.690
CKO_04103
Hypothetical protein.
       0.618
hfq
Hypothetical protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
 
    0.556
CKO_03666
Hypothetical protein; KEGG: ecp:ECP_4414 6.7e-206 N-acetylmuramoyl-L-alanine amidase AmiB precursor K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase.
 
   
 0.548
CKO_04605
Hypothetical protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
    0.531
CKO_02972
Hypothetical protein; KEGG: sty:STY0281 3.2e-229 mltD; membrane-bound lytic murein transglycosylase d precursor K08307; COG: COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
 
  
 0.513
CKO_04182
Hypothetical protein; KEGG: ssn:SSO_2974 1.4e-210 putative amidase K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase.
 
   
 0.494
CKO_04055
Hypothetical protein; KEGG: stt:t2732 1.3e-186 mltB; membrane-bound lytic transglycosylase B precursor K08305; COG: COG2951 Membrane-bound lytic murein transglycosylase B.
 
    
 0.488
CKO_04819
Hypothetical protein; KEGG: stm:STM3493 0. mrcA; transpeptidase of penicillin-binding protein 1a (peptidoglycan synthetase) K05366; COG: COG5009 Membrane carboxypeptidase/penicillin-binding protein.
  
   
 0.487
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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