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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04147Hypothetical protein; KEGG: shn:Shewana3_2825 3.5e-10 dTDP-4-dehydrorhamnose 3,5-epimerase K01790; COG: COG3098 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96. (109 aa)    
Predicted Functional Partners:
CKO_04146
Hypothetical protein; KEGG: ssn:SSO_2948 6.1e-132 yqcB; hypothetical protein K06175; COG: COG0564 Pseudouridylate synthases, 23S RNA-specific; Psort location: Cytoplasmic, score:8.96.
  
  
 0.900
CKO_04145
Hypothetical protein; KEGG: aha:AHA_3371 7.8e-14 sulfite reductase [NADPH] flavoprotein, alpha-component K00379; COG: COG0716 Flavodoxins.
       0.759
CKO_04144
Hypothetical protein.
       0.698
CKO_00659
Hypothetical protein; COG: NOG06773 non supervised orthologous group; Psort location: CytoplasmicMembrane, score:9.46.
  
     0.630
CKO_04259
Hypothetical protein; COG: COG2938 Uncharacterized conserved protein; Psort location: Cytoplasmic, score:8.96.
  
     0.562
CKO_04142
Hypothetical protein; KEGG: stm:STM2961 2.8e-239 ygcY; putative D-glucarate dehydratase K01706; COG: COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.
       0.487
CKO_04141
Hypothetical protein; KEGG: sec:SC2900 1.2e-236 gudD; D-glucarate dehydratase K01706; COG: COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Psort location: Cytoplasmic, score:8.96.
       0.472
CKO_00450
Hypothetical protein; KEGG: spt:SPA0477 3.3e-78 sixA; phosphohistidine phosphatase K08296; COG: COG2062 Phosphohistidine phosphatase SixA; Psort location: Cytoplasmic, score:8.96.
  
     0.461
rnb
Hypothetical protein; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction.
  
     0.446
nfuA
Hypothetical protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
     0.446
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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