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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04175Hypothetical protein; KEGG: cps:CPS_2211 2.2e-15 putative selenocysteine lyase K02426; COG: COG2166 SufE protein probably involved in Fe-S center assembly. (148 aa)    
Predicted Functional Partners:
CKO_04174
Hypothetical protein; KEGG: ssn:SSO_2967 3.1e-192 cysteine sulfinate desulfinase; COG: COG0520 Selenocysteine lyase; Psort location: Cytoplasmic, score:8.96.
 
 0.995
sufS
Hypothetical protein; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo.
 
 0.935
CKO_01716
Hypothetical protein; COG: COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.800
CKO_01715
Hypothetical protein; KEGG: noc:Noc_2489 1.8e-86 sufC; FeS assembly ATPase SufC K09013; COG: COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
 
 
 0.724
CKO_01714
Hypothetical protein; COG: COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.714
rlmM
Hypothetical protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily.
 
    0.710
CKO_04170
Hypothetical protein; COG: COG2363 Uncharacterized small membrane protein; Psort location: CytoplasmicMembrane, score:9.46.
  
    0.670
CKO_04173
Hypothetical protein; COG: NOG14132 non supervised orthologous group.
       0.546
CKO_04171
Hypothetical protein; KEGG: shn:Shewana3_3435 3.9e-08 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score:9.97; Belongs to the LysR transcriptional regulatory family.
  
    0.528
CKO_04176
Hypothetical protein; KEGG: cal:orf19.2115 9.8e-25 molybdopterin-converting factor; COG: COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1.
 
 
 
 0.526
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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