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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04191Hypothetical protein; COG: COG4795 Type II secretory pathway, component PulJ; Psort location: Cytoplasmic, score:8.96. (185 aa)    
Predicted Functional Partners:
CKO_04193
Hypothetical protein; COG: COG2165 Type II secretory pathway, pseudopilin PulG.
 
 
 0.966
CKO_02221
Hypothetical protein; COG: COG3156 Type II secretory pathway, component PulK.
  
 
 0.881
CKO_04189
COG: COG4967 Tfp pilus assembly protein PilV.
     
 0.783
CKO_04190
Hypothetical protein; COG: NOG10274 non supervised orthologous group.
  
  
 0.781
CKO_04896
Hypothetical protein; COG: NOG09778 non supervised orthologous group.
  
     0.773
recC
Hypothetical protein; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme [...]
       0.705
CKO_02223
Hypothetical protein; COG: COG2165 Type II secretory pathway, pseudopilin PulG.
  
 
 0.695
CKO_02224
Hypothetical protein; COG: COG2165 Type II secretory pathway, pseudopilin PulG.
  
 
 0.695
CKO_02225
Hypothetical protein; COG: COG2165 Type II secretory pathway, pseudopilin PulG.
  
 
 0.695
CKO_02574
Hypothetical protein; KEGG: spt:SPA0750 0.0057 wzc; putative tyrosine-protein kinase K00903; COG: COG3765 Chain length determinant protein; Psort location: CytoplasmicMembrane, score:9.82.
  
     0.680
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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