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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04205Hypothetical protein; COG: NOG13901 non supervised orthologous group. (72 aa)    
Predicted Functional Partners:
CKO_03869
COG: COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
   
    0.843
CKO_03415
Hypothetical protein; COG: NOG16919 non supervised orthologous group.
   
    0.836
CKO_01764
Hypothetical protein; COG: NOG09763 non supervised orthologous group.
  
    0.759
CKO_04502
Hypothetical protein; COG: NOG11454 non supervised orthologous group.
  
     0.754
CKO_02304
COG: COG3637 Opacity protein and related surface antigens; Psort location: OuterMembrane, score:10.00.
  
     0.737
CKO_01127
Hypothetical protein; COG: NOG09766 non supervised orthologous group.
  
     0.731
CKO_01768
Hypothetical protein; COG: COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein; Psort location: Periplasmic, score:10.00.
  
    0.668
lpoB
Hypothetical protein; Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b).
  
     0.666
tus
Hypothetical protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.
  
     0.661
CKO_00079
Hypothetical protein; KEGG: psp:PSPPH_5214 2.0e-07 atpI; ATP synthase F0, I subunit K02116; COG: COG3312 F0F1-type ATP synthase, subunit I; Psort location: CytoplasmicMembrane, score:9.46.
  
     0.657
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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