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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04381Hypothetical protein; KEGG: eci:UTI89_C3411 2.1e-147 yghU; hypothetical GST-like protein YghU K00799; COG: COG0625 Glutathione S-transferase. (289 aa)    
Predicted Functional Partners:
rpoA
Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.792
rpoC
Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.656
rpoB
Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.647
CKO_03826
Hypothetical protein; KEGG: xcc:XCC2286 2.7e-58 gstA; glutathione S-transferase K00799; COG: COG0625 Glutathione S-transferase; Belongs to the GST superfamily.
  
   
 0.633
CKO_02414
Hypothetical protein; KEGG: eco:b0731 3.2e-293 hrsA; PTS family enzyme IIA (N-terminal); enzyme IIBC (C-terminal), induction of OmpC K02768:K02769:K02770; COG: COG1299 Phosphotransferase system, fructose-specific IIC component; Psort location: CytoplasmicMembrane, score:10.00.
    
   0.620
CKO_03575
Hypothetical protein; KEGG: vvy:VVA1395 5.3e-165 phosphotransferase system, fructose-specific IIC component K02769:K02770; COG: COG1299 Phosphotransferase system, fructose-specific IIC component; Psort location: CytoplasmicMembrane, score:10.00.
    
   0.620
CKO_03579
Hypothetical protein; KEGG: vvy:VVA1392 3.8e-36 PTS fructose-specific enzyme IIA component homolog K02768; COG: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); Psort location: Cytoplasmic, score:9.26.
    
   0.620
rpoZ
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.611
CKO_00057
Hypothetical protein; KEGG: eci:UTI89_C4266 8.3e-89 yieF; hypothetical protein; COG: COG0431 Predicted flavoprotein.
  
  
 0.572
CKO_05048
Hypothetical protein; KEGG: eci:UTI89_C4134 2.8e-95 yibF; putative S-transferase K00799; COG: COG0625 Glutathione S-transferase; Psort location: Cytoplasmic, score:8.96.
 
   
 0.493
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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