STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04418Hypothetical protein; KEGG: sgl:SG2119 1.3e-124 putative glucuronyl hydrolase K01238; COG: NOG09941 non supervised orthologous group. (396 aa)    
Predicted Functional Partners:
CKO_04420
COG: COG4289 Uncharacterized protein conserved in bacteria.
 
     0.858
kduI
Hypothetical protein; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.812
CKO_02449
COG: COG4289 Uncharacterized protein conserved in bacteria.
 
     0.679
CKO_04419
Hypothetical protein; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:10.00.
       0.678
CKO_02793
Hypothetical protein; KEGG: ypa:YPA_2031 3.3e-94 gluconate 5-dehydrogenase K00046; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score:9.97.
 
   
 0.559
CKO_04130
Hypothetical protein; KEGG: ecs:ECs3630 2.2e-134 putative oxidoreductase; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score:9.26.
 
   
 0.552
CKO_04219
Hypothetical protein; KEGG: ecj:JW2810 3.1e-128 kduD; 2-deoxy-D-gluconate 3-dehydrogenase K00065; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score:9.97.
 
   
 0.544
CKO_01753
Hypothetical protein; KEGG: spt:SPA2884 7.4e-104 kduD; 2-keto-3-deoxygluconate oxidoreductase K00065; COG: COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Psort location: Cytoplasmic, score:9.97.
 
   
 0.537
CKO_01082
Hypothetical protein; COG: COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
  
     0.504
CKO_04421
Hypothetical protein; KEGG: bcz:BCZK3497 6.4e-12 adaA; transcriptional regulator, AraC family K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score:9.26.
       0.464
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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