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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04489Hypothetical protein; COG: COG1451 Predicted metal-dependent hydrolase. (167 aa)    
Predicted Functional Partners:
rlmG
Hypothetical protein; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA.
 
     0.644
CKO_04490
KEGG: ecp:ECP_3178 1.1e-148 hypothetical oxidoreductase YgjR; COG: COG0673 Predicted dehydrogenases and related proteins; Psort location: Cytoplasmic, score:8.96.
       0.622
CKO_00670
COG: COG4807 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96.
 
    0.617
rlmF
Hypothetical protein; Specifically methylates the adenine in position 1618 of 23S rRNA.
 
     0.584
CKO_03175
Hypothetical protein; KEGG: bpm:BURPS1710b_0319 5.9e-40 YaeQ protein K00356; COG: COG4681 Uncharacterized protein conserved in bacteria.
 
    0.581
ppnP
Hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
  
     0.535
CKO_01995
COG: COG3132 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96; Belongs to the UPF0502 family.
  
     0.527
CKO_00083
Hypothetical protein; COG: COG1522 Transcriptional regulators.
   
    0.416
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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