close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04496Hypothetical protein; KEGG: eci:UTI89_C1658 7.7e-06 ydcR; hypothetical protein YdcR K00811; COG: COG2186 Transcriptional regulators; Psort location: Cytoplasmic, score:8.96. (258 aa)    
Predicted Functional Partners:
CKO_04495
Hypothetical protein; KEGG: fal:FRAAL6577 0.0031 hppA; pyrophosphate-energized proton pump (pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (membrane-bound proton-translocating pyrophosphatase) K01507; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:10.00.
 
   
 0.814
CKO_03396
Hypothetical protein; KEGG: stm:STM4580.S 1.5e-217 nadR; nicotinamide-nucleotide adenylyltransferase K00952:K06210:K06211; COG: COG3172 Predicted ATPase/kinase involved in NAD metabolism; Psort location: Cytoplasmic, score:8.96.
   
  
 0.646
CKO_00095
Hypothetical protein; KEGG: reh:H16_A3019 0.0056 hutC; histidine utilization repressor; COG: COG2186 Transcriptional regulators; Psort location: Cytoplasmic, score:8.96.
  
     0.586
CKO_01570
Hypothetical protein; KEGG: msm:MSMEG_3400 1.9e-07 glutamyl-tRNA(Gln) amidotransferase subunit A K01957; COG: COG1802 Transcriptional regulators; Psort location: Cytoplasmic, score:8.96.
  
  
 0.546
CKO_00030
Hypothetical protein; KEGG: btk:BT9727_3183 7.5e-24 transcriptional regulator, GntR family; COG: COG2188 Transcriptional regulators.
  
    0.530
CKO_02296
Hypothetical protein; KEGG: dre:30298 0.0043 jak2b; Janus kinase 2b K04447; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score:10.00.
 
   
 0.529
CKO_04493
Hypothetical protein; KEGG: ecp:ECP_3182 4.9e-249 altronate hydrolase K01685; COG: COG2721 Altronate dehydratase; Psort location: Cytoplasmic, score:8.96.
 
   
 0.516
CKO_01146
Hypothetical protein; COG: COG1414 Transcriptional regulator; Psort location: Cytoplasmic, score:8.96.
  
  
 0.507
CKO_04497
Hypothetical protein; KEGG: sab:SAB2386 7.4e-10 probable alkaline phosphatase K01077; COG: COG0586 Uncharacterized membrane-associated protein; Psort location: CytoplasmicMembrane, score:10.00.
     
 0.496
CKO_02415
Hypothetical protein; KEGG: btk:BT9727_3183 4.3e-21 transcriptional regulator, GntR family; COG: COG2188 Transcriptional regulators; Psort location: Cytoplasmic, score:8.96.
  
    0.485
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.