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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
garLHypothetical protein; Catalyzes the reversible retro-aldol cleavage of both 5-keto- 4-deoxy-D-glucarate and 2-keto-3-deoxy-D-glucarate to pyruvate and tartronic semialdehyde; Belongs to the HpcH/HpaI aldolase family. KDGluc aldolase subfamily. (257 aa)    
Predicted Functional Partners:
garR
Hypothetical protein; Catalyzes the reduction of tatronate semialdehyde to D- glycerate; Belongs to the HIBADH-related family. 2-hydroxy-3- oxopropionate reductase subfamily.
 
 
 0.970
CKO_04141
Hypothetical protein; KEGG: sec:SC2900 1.2e-236 gudD; D-glucarate dehydratase K01706; COG: COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Psort location: Cytoplasmic, score:8.96.
 
 
 0.956
garD
Hypothetical protein; Catalyzes the dehydration of galactarate to form 5-dehydro-4- deoxy-D-glucarate.
 
 
  0.948
CKO_04142
Hypothetical protein; KEGG: stm:STM2961 2.8e-239 ygcY; putative D-glucarate dehydratase K01706; COG: COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.
 
 
 0.812
CKO_04525
Hypothetical protein.
       0.773
CKO_04521
Hypothetical protein; KEGG: sfx:S3376 1.1e-171 yhaD; glycerate kinase K00865; COG: COG1929 Glycerate kinase; Belongs to the glycerate kinase type-1 family.
  
  
 0.579
CKO_04524
Hypothetical protein.
       0.572
CKO_04431
Hypothetical protein; KEGG: azo:azo2868 2.4e-36 ygiD; protocatechuate 4,5-dioxygenase K04099; COG: COG3384 Uncharacterized conserved protein.
  
  
 0.557
CKO_03358
Hypothetical protein; KEGG: reu:Reut_B5809 7.3e-65 5-carboxymethyl-2-hydroxymuconate delta-isomerase K01826; COG: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); Psort location: Cytoplasmic, score:8.96.
  
  
 0.540
CKO_01184
Hypothetical protein; KEGG: chu:CHU_1891 1.6e-39 ycgM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, fumarylacetoacetate hydrolase family K01828; COG: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); Psort location: Cytoplasmic, score:8.96.
  
  
 0.497
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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