STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04606COG: COG1544 Ribosome-associated protein Y (PSrp-1); Psort location: Cytoplasmic, score:8.96. (95 aa)    
Predicted Functional Partners:
CKO_04607
Hypothetical protein; KEGG: sbo:SBO_3178 1.6e-78 ptsN; phosphotransferase system enzyme IIA K02806; COG: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); Psort location: Cytoplasmic, score:9.97.
 
  
 0.943
rpsI
COG: COG0103 Ribosomal protein S9; Psort location: Cytoplasmic, score:8.96; Belongs to the universal ribosomal protein uS9 family.
 
 
 
 0.887
rpsU
COG: COG0828 Ribosomal protein S21; Psort location: Cytoplasmic, score:8.96; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.883
rpmC
COG: COG0255 Ribosomal protein L29; Psort location: Cytoplasmic, score:8.96; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.883
rpmA
COG: COG0211 Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.872
rpsE
Hypothetical protein; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.870
rplI
Hypothetical protein; Binds to the 23S rRNA.
  
   0.860
rpsD
Hypothetical protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.856
rpmG
COG: COG0267 Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.856
CKO_03368
COG: COG0268 Ribosomal protein S20.
  
 
   0.855
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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