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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04660Hypothetical protein; KEGG: shn:Shewana3_3829 8.1e-18 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:9.82. (646 aa)    
Predicted Functional Partners:
CKO_04139
Hypothetical protein; KEGG: spt:SPA2823 0. barA; sensor protein; COG: COG0784 FOG: CheY-like receiver; Psort location: CytoplasmicMembrane, score:9.99.
 
  
 0.956
CKO_04368
Hypothetical protein; KEGG: sbo:SBO_2396 2.5e-190 evgS, evgA; putative sensor for regulator EvgA K07679; COG: COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Psort location: CytoplasmicMembrane, score:9.82.
 
  
 0.939
CKO_04614
Hypothetical protein; KEGG: sec:SC3266 0. arcB; aerobic respiration control sensor protein K07648; COG: COG0784 FOG: CheY-like receiver; Psort location: CytoplasmicMembrane, score:9.97.
  
 
 0.896
CKO_04971
Hypothetical protein; KEGG: mca:MCA1246 1.9e-48 methyltransferase CheR, putative K03412:K00575; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:9.82.
 
  
 0.875
CKO_00712
Hypothetical protein; KEGG: eci:UTI89_C2343 0. yegE; putative sensor-type protein; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:10.00.
 
 
 0.855
CKO_00437
Hypothetical protein; KEGG: eci:UTI89_C1702 2.7e-177 hypothetical protein; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:7.88.
 
 
0.823
CKO_00401
Hypothetical protein; KEGG: vfi:VF0087 2.6e-23 sensory transduction protein kinase; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.817
CKO_03924
KEGG: vfi:VFA0057 5.8e-17 sensor protein; COG: COG2199 FOG: GGDEF domain.
  
  
 0.809
CKO_00602
Hypothetical protein; KEGG: vfi:VF0494 5.9e-30 sensory transduction protein kinase; COG: COG2200 FOG: EAL domain; Psort location: CytoplasmicMembrane, score:9.82.
  
  
 0.808
rcsD
Hypothetical protein; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsD is a phosphotransfer intermediate between the sensor kinase RcsC and the response regulator RcsB. It acquires a phosphoryl group from RcsC and transfers it to RcsB.
 
  
 0.794
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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