STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04669Hypothetical protein; KEGG: rpr:RP465 2.8e-12 phoR; alkaline phosphatase synthesis sensor protein phoR K07636; COG: COG4145 Na+/panthothenate symporter; Psort location: CytoplasmicMembrane, score:10.00; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (484 aa)    
Predicted Functional Partners:
CKO_04668
COG: COG3924 Predicted membrane protein.
 
  
 0.955
prmA
Hypothetical protein; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
  
    0.801
aroQ
Hypothetical protein; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
     
 0.620
CKO_03379
Hypothetical protein; KEGG: hpa:HPAG1_0925 1.4e-63 D-alanine glycine permease K01613; COG: COG1115 Na+/alanine symporter; Psort location: CytoplasmicMembrane, score:10.00.
  
     0.583
CKO_04667
Hypothetical protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
       0.573
CKO_04666
Hypothetical protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
       0.563
CKO_04671
Hypothetical protein; KEGG: eca:ECA0257 1.1e-54 cah; carbonic anhydrase K01674; COG: COG3338 Carbonic anhydrase.
       0.533
CKO_04660
Hypothetical protein; KEGG: shn:Shewana3_3829 8.1e-18 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; COG: COG2199 FOG: GGDEF domain; Psort location: CytoplasmicMembrane, score:9.82.
     
 0.454
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.