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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04693Hypothetical protein; COG: NOG13911 non supervised orthologous group; Psort location: Cytoplasmic, score:8.96. (85 aa)    
Predicted Functional Partners:
aroE
Hypothetical protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
  
 0.961
CKO_04696
Hypothetical protein; KEGG: cvi:CV4269 3.9e-44 topA; DNA topoisomerase K03168; COG: COG0551 Zn-finger domain associated with topoisomerase type I; Psort location: Cytoplasmic, score:8.96.
     
 0.845
tsaC
Hypothetical protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate.
  
  
 0.840
CKO_00079
Hypothetical protein; KEGG: psp:PSPPH_5214 2.0e-07 atpI; ATP synthase F0, I subunit K02116; COG: COG3312 F0F1-type ATP synthase, subunit I; Psort location: CytoplasmicMembrane, score:9.46.
  
     0.730
smg
COG: COG2922 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score:8.96; Belongs to the Smg family.
       0.729
CKO_04698
Hypothetical protein; COG: COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
       0.729
CKO_01950
Hypothetical protein; KEGG: sec:SC1158 5.2e-80 ycfN; putative cytoplasmic protein K07251; COG: COG0510 Predicted choline kinase involved in LPS biosynthesis; Psort location: Cytoplasmic, score:8.96.
  
     0.622
CKO_04594
Hypothetical protein; KEGG: reu:Reut_A3046 0.00056 hemK; modification methylase HemK K02493; COG: COG3113 Predicted NTP binding protein (contains STAS domain).
  
     0.577
CKO_02750
Hypothetical protein; COG: COG3248 Nucleoside-binding outer membrane protein; Psort location: OuterMembrane, score:10.00.
  
     0.571
CKO_03890
Hypothetical protein; COG: NOG06220 non supervised orthologous group.
  
     0.571
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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