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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKO_04741Hypothetical protein; KEGG: sec:SC3376 1.9e-59 hopD; leader peptidase HopD K02506; COG: COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases; Psort location: CytoplasmicMembrane, score:10.00; Belongs to the peptidase A24 family. (166 aa)    
Predicted Functional Partners:
CKO_03270
Hypothetical protein; COG: COG1459 Type II secretory pathway, component PulF; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.801
CKO_02157
Hypothetical protein; KEGG: xac:XAC1087 0.0012 gloB; hydroxyacylglutathione hydrolase K01069; COG: COG0658 Predicted membrane metal-binding protein; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.783
CKO_02226
Hypothetical protein; COG: COG1459 Type II secretory pathway, component PulF; Psort location: CytoplasmicMembrane, score:10.00.
 
  
 0.782
CKO_02225
Hypothetical protein; COG: COG2165 Type II secretory pathway, pseudopilin PulG.
 
  
 0.765
CKO_02227
Hypothetical protein; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.743
CKO_04698
Hypothetical protein; COG: COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
  
  
 0.741
CKO_04814
Hypothetical protein; COG: COG4796 Type II secretory pathway, component HofQ; Psort location: OuterMembrane, score:10.00.
 
  
 0.716
CKO_03269
Hypothetical protein; KEGG: pen:PSEEN2333 1.7e-81 xcpR-2; type II secretion pathway protein E K01509; COG: COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; Psort location: Cytoplasmic, score:9.97.
 
 
 0.708
CKO_02718
Hypothetical protein; KEGG: bur:Bcep18194_A5099 0.00019 RNA binding S1; COG: COG1555 DNA uptake protein and related DNA-binding proteins; Psort location: CytoplasmicMembrane, score:9.97.
   
  
 0.696
CKO_04740
Hypothetical protein.
       0.572
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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