| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CKO_04826 | CKO_04827 | CKO_04826 | CKO_04827 | Hypothetical protein; KEGG: spt:SPA3366 1.9e-233 envZ; two-component sensor kinase EnvZ K07638; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score:10.00. | Hypothetical protein; KEGG: bur:Bcep18194_A5728 6.3e-59 two component transcriptional regulator, winged helix family; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score:9.97. | 0.999 |
| CKO_04826 | CKO_04829 | CKO_04826 | CKO_04829 | Hypothetical protein; KEGG: spt:SPA3366 1.9e-233 envZ; two-component sensor kinase EnvZ K07638; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score:10.00. | Hypothetical protein; KEGG: bur:Bcep18194_A5099 1.2e-245 RNA binding S1; COG: COG2183 Transcriptional accessory protein; Psort location: Cytoplasmic, score:8.96. | 0.460 |
| CKO_04826 | greB | CKO_04826 | CKO_04828 | Hypothetical protein; KEGG: spt:SPA3366 1.9e-233 envZ; two-component sensor kinase EnvZ K07638; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score:10.00. | Hypothetical protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | 0.577 |
| CKO_04827 | CKO_04826 | CKO_04827 | CKO_04826 | Hypothetical protein; KEGG: bur:Bcep18194_A5728 6.3e-59 two component transcriptional regulator, winged helix family; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score:9.97. | Hypothetical protein; KEGG: spt:SPA3366 1.9e-233 envZ; two-component sensor kinase EnvZ K07638; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score:10.00. | 0.999 |
| CKO_04827 | greB | CKO_04827 | CKO_04828 | Hypothetical protein; KEGG: bur:Bcep18194_A5728 6.3e-59 two component transcriptional regulator, winged helix family; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score:9.97. | Hypothetical protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | 0.561 |
| CKO_04829 | CKO_04826 | CKO_04829 | CKO_04826 | Hypothetical protein; KEGG: bur:Bcep18194_A5099 1.2e-245 RNA binding S1; COG: COG2183 Transcriptional accessory protein; Psort location: Cytoplasmic, score:8.96. | Hypothetical protein; KEGG: spt:SPA3366 1.9e-233 envZ; two-component sensor kinase EnvZ K07638; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score:10.00. | 0.460 |
| CKO_04829 | greB | CKO_04829 | CKO_04828 | Hypothetical protein; KEGG: bur:Bcep18194_A5099 1.2e-245 RNA binding S1; COG: COG2183 Transcriptional accessory protein; Psort location: Cytoplasmic, score:8.96. | Hypothetical protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | 0.584 |
| CKO_04829 | rpoA | CKO_04829 | CKO_04708 | Hypothetical protein; KEGG: bur:Bcep18194_A5099 1.2e-245 RNA binding S1; COG: COG2183 Transcriptional accessory protein; Psort location: Cytoplasmic, score:8.96. | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.887 |
| CKO_04829 | rpoB | CKO_04829 | CKO_03002 | Hypothetical protein; KEGG: bur:Bcep18194_A5099 1.2e-245 RNA binding S1; COG: COG2183 Transcriptional accessory protein; Psort location: Cytoplasmic, score:8.96. | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.853 |
| CKO_04829 | rpoZ | CKO_04829 | CKO_05106 | Hypothetical protein; KEGG: bur:Bcep18194_A5099 1.2e-245 RNA binding S1; COG: COG2183 Transcriptional accessory protein; Psort location: Cytoplasmic, score:8.96. | Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.823 |
| greB | CKO_04826 | CKO_04828 | CKO_04826 | Hypothetical protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Hypothetical protein; KEGG: spt:SPA3366 1.9e-233 envZ; two-component sensor kinase EnvZ K07638; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score:10.00. | 0.577 |
| greB | CKO_04827 | CKO_04828 | CKO_04827 | Hypothetical protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Hypothetical protein; KEGG: bur:Bcep18194_A5728 6.3e-59 two component transcriptional regulator, winged helix family; COG: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Psort location: Cytoplasmic, score:9.97. | 0.561 |
| greB | CKO_04829 | CKO_04828 | CKO_04829 | Hypothetical protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Hypothetical protein; KEGG: bur:Bcep18194_A5099 1.2e-245 RNA binding S1; COG: COG2183 Transcriptional accessory protein; Psort location: Cytoplasmic, score:8.96. | 0.584 |
| greB | pnp | CKO_04828 | CKO_04562 | Hypothetical protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Hypothetical protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.578 |
| greB | rpoA | CKO_04828 | CKO_04708 | Hypothetical protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.833 |
| greB | rpoB | CKO_04828 | CKO_03002 | Hypothetical protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.856 |
| greB | rpoC | CKO_04828 | CKO_03001 | Hypothetical protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.900 |
| greB | rpoD | CKO_04828 | CKO_04466 | Hypothetical protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Hypothetical protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.531 |
| greB | rpoZ | CKO_04828 | CKO_05106 | Hypothetical protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.826 |
| greB | rpsO | CKO_04828 | CKO_04564 | Hypothetical protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length. | Hypothetical protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.610 |
STRING v12.5 is now available!
